#156142 Report by node cursor covering 2045 tests from 59 modules resulted into 36 errors

Report

ObsPy version
0.0.0.dev+0.g04ad64a24d
GitHub Pull Request
-
Report file
JSON document
Total runtime
88.2 sec
Report date/time
April 9, 2026, 12:44 a.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
cursor
Processor
x86_64
Python Compiler
GCC 13.3.0
Python Implementation
CPython
Python Version
3.12.8
Release
6.12.58+
System
Linux
Version
#1 SMP PREEMPT_DYNAMIC Sat Jan 17 06:53:48 UTC 2026

Dependencies

cartopy
---
decorator
5.2.1
flake8
7.3.0
geographiclib
---
lxml
6.0.2
matplotlib
3.10.8
numpy
1.26.4
obspy
0.0.0.dev+0.g04ad64a24d
pyproj
3.7.2
pytest
9.0.3
pytest-json-report
1.5.0
requests
2.33.1
scipy
1.17.1
setuptools
81.0.0
shapefile
---
sqlalchemy
2.0.49

Modules (59)

Module Errors / Failures Tracebacks
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem 9 1 2 3 4 5 6 7 8 9
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl - -
obspy.clients.seedlink Not tested -
obspy.clients.syngine Not tested -
obspy.core 13 10 11 12 13 14 15 16 17 18 19 20 21 22
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.alsep - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal 14 23 24 25 26 27 28 29 30 31 32 33 34 35 36
obspy.taup - -
Summary 36 36

Tracebacks (36)

E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d328e810; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; station>, <sqlalchemy.sql.elements.Label at 0x7f84d324c710; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3281220; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32944d0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3296db0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d328e810; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; station>, <sqlalchemy.sql.elements.Label at 0x7f84d324c710; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3281220; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32944d0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3296db0; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d328e810; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; station>, <sqlalchemy.sql.elements.Label at 0x7f84d324c710; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3281220; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32944d0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3296db0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d328e810; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; station>, <sqlalchemy.sql.elements.Label at 0x7f84d324c710; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3281220; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32944d0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3296db0; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d5ca9a60; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3294fb0; station>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7c50; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b6690; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d5ca9a60; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3294fb0; station>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7c50; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b6690; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d5ca9a60; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3294fb0; station>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7c50; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b6690; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d5ca9a60; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3294fb0; station>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7c50; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b6690; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d327ab40; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327a510; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327b860; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3278860; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d3278da0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278140; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d327ab40; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327a510; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327b860; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3278860; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d3278da0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278140; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d327ab40; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327a510; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327b860; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3278860; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d3278da0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278140; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d327ab40; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327a510; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327b860; location>, <sqlalchemy.sql.elements.Label at 0x7f84d3278860; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d3278da0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278140; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d328f3b0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328f980; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328e240; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328c5c0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d328f3b0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328f980; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328e240; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328c5c0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d328f3b0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328f980; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328e240; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328c5c0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d328f3b0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328f980; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328e240; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328c5c0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d33344d0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3334c50; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3334e00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b5220; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d33344d0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3334c50; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3334e00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b5220; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d33344d0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3334c50; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3334e00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b5220; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d33344d0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d3334c50; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3334e00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d32b43b0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d32b5220; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d32b7bf0; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d3283530; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327bb60; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3279d00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327bbf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327a180; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278620; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d3283530; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327bb60; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3279d00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327bbf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327a180; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278620; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d3283530; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327bb60; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3279d00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327bbf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327a180; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278620; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d3283530; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327bb60; station>, <sqlalchemy.sql.elements.Label at 0x7f84d3279d00; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327bbf0; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327a180; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d3278620; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d7ab8da0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328c740; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328ca40; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d7ab8da0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328c740; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328ca40; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d7ab8da0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328c740; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328ca40; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d7ab8da0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d328c740; station>, <sqlalchemy.sql.elements.Label at 0x7f84d328fbf0; location>, <sqlalchemy.sql.elements.Label at 0x7f84d328ef00; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d328d5b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d328ca40; endtime>)?
E sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d5c282c0; network>, <sqlalchemy.sql.elements.Label at 0x7f84db37ce90; station>, <sqlalchemy.sql.elements.Label at 0x7f84db37cc80; location>, <sqlalchemy.sql.elements.Label at 0x7f84db37c440; channel>, <sqlalchemy.sql.elements.Label at 0x7f84db37de50; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84db37d6a0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d5c282c0; network>, <sqlalchemy.sql.elements.Label at 0x7f84db37ce90; station>, <sqlalchemy.sql.elements.Label at 0x7f84db37cc80; location>, <sqlalchemy.sql.elements.Label at 0x7f84db37c440; channel>, <sqlalchemy.sql.elements.Label at 0x7f84db37de50; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84db37d6a0; endtime>)?
During handling of the above exception, another exception occurred:
E ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84d5c282c0; network>, <sqlalchemy.sql.elements.Label at 0x7f84db37ce90; station>, <sqlalchemy.sql.elements.Label at 0x7f84db37cc80; location>, <sqlalchemy.sql.elements.Label at 0x7f84db37c440; channel>, <sqlalchemy.sql.elements.Label at 0x7f84db37de50; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84db37d6a0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84d5c282c0; network>, <sqlalchemy.sql.elements.Label at 0x7f84db37ce90; station>, <sqlalchemy.sql.elements.Label at 0x7f84db37cc80; location>, <sqlalchemy.sql.elements.Label at 0x7f84db37c440; channel>, <sqlalchemy.sql.elements.Label at 0x7f84db37de50; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84db37d6a0; endtime>)?
055 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
056
057 * :meth:`~Client.get_availability_extent()`:
058 Returns a list of (network, station, location, channel, earliest, latest)
059 tuples that represent the full extent of available data. This example
060 retrieves from the very small obspy test tsindex database a list of all
061 available ("BHZ") channel extents from the Global Seismograph Network
062 ("IU") for all times.
063
064 >>> extents = client.get_availability_extent(network="IU", channel="BHZ")
UNEXPECTED EXCEPTION: ValueError('Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>)?')
Traceback (most recent call last):
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/tsindex.py", line 1727, in _fetch_summary_rows
sa.select([
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/_selectable_constructors.py", line 538, in select
return Select(*entities)
^^^^^^^^^^^^^^^^^
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/selectable.py", line 5404, in __init__
coercions.expect(
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/coercions.py", line 396, in expect
resolved = impl._literal_coercion(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/coercions.py", line 635, in _literal_coercion
self._raise_for_expected(element, argname)
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/coercions.py", line 1133, in _raise_for_expected
return super()._raise_for_expected(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/coercions.py", line 696, in _raise_for_expected
super()._raise_for_expected(
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/sqlalchemy/sql/coercions.py", line 519, in _raise_for_expected
raise exc.ArgumentError(msg, code=code) from err
sqlalchemy.exc.ArgumentError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>)?
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/doctest.py", line 1368, in __run
exec(compile(example.source, filename, "single",
File "<doctest obspy.clients.filesystem.tsindex[6]>", line 1, in <module>
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/tsindex.py", line 358, in get_availability_extent
summary_rows = self._get_summary_rows(network, station,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/tsindex.py", line 597, in _get_summary_rows
return self.request_handler._fetch_summary_rows(query_rows)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/tsindex.py", line 1744, in _fetch_summary_rows
raise ValueError(str(err))
ValueError: Column expression, FROM clause, or other columns clause element expected, got [<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>]. Did you mean to say select(<sqlalchemy.sql.elements.Label at 0x7f84db37cfb0; network>, <sqlalchemy.sql.elements.Label at 0x7f84d327fa10; station>, <sqlalchemy.sql.elements.Label at 0x7f84d327eb10; location>, <sqlalchemy.sql.elements.Label at 0x7f84d327cb30; channel>, <sqlalchemy.sql.elements.Label at 0x7f84d327e1b0; starttime>, <sqlalchemy.sql.elements.Label at 0x7f84d327e4b0; endtime>)?
/home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/tsindex.py:64: UnexpectedException
E TypeError: 'NoneType' object is not callable
During handling of the above exception, another exception occurred:
E TypeError: 'NoneType' object is not callable
E TypeError: 'NoneType' object is not callable
During handling of the above exception, another exception occurred:
E TypeError: 'NoneType' object is not callable
E TypeError: 'NoneType' object is not callable
During handling of the above exception, another exception occurred:
E TypeError: 'NoneType' object is not callable
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.signal' has no attribute 'hann'
The above exception was the direct cause of the following exception:
E ImportError: module 'scipy.signal' has no attribute 'hann'
E AttributeError: module 'scipy.signal' has no attribute 'hann'
The above exception was the direct cause of the following exception:
E ImportError: module 'scipy.signal' has no attribute 'hann'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.signal' has no attribute 'hann'
The above exception was the direct cause of the following exception:
E ImportError: module 'scipy.signal' has no attribute 'hann'
E AttributeError: module 'scipy.integrate' has no attribute 'cumtrapz'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AttributeError: module 'scipy.signal' has no attribute 'hamming'
E AssertionError: False is not true

Skipped tests (41)

Submodule Test Skip message
core core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_local Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_combined_station_event_plot Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_local Skipped: cartopy not installed
core.util core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_with_geographiclib Skipped: Module geographiclib is not installed
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_issue_375 Skipped: Module geographiclib is not installed
imaging imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.gcf io/gcf/core.py::obspy.io.gcf.core._write_gcf Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_with_extra_field Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_with_extra_field Skipped: pyshp not installed
io.wav io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal signal/tests/test_quality_control.py::QualityControlTestCase::test_schema_validation Skipped: Test requires the jsonschema module
taup taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_p_iasp91_geo_manual Skipped: Module geographiclib is not installed
taup taup/tests/test_tau.py::TestTauPyModel::test_pierce_p_iasp91_geo Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_single_path_geo_iasp91 Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_geo Skipped: Module geographiclib is not installed or too old.
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_resampling Skipped: Module geographiclib is not installed or too old.

Slowest tests (20)

Runtime Test
2.739s io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
2.626s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
2.530s taup/__init__.py::obspy.taup
1.956s taup/tests/test_tau.py::TestTauPyModel::test_regional_models
1.860s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
1.840s core/stream.py::obspy.core.stream.read
1.298s signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
1.296s signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
1.287s core/tests/test_trace.py::TestTrace::test_remove_response_plot
1.124s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
1.110s core/tests/test_trace.py::TestTrace::test_trim_floating_point_with_padding_2
0.995s taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
0.947s io/arclink/tests/test_inventory_xml.py::ArclinkInventoryTestCase::test_auto_read_arclink_xml
0.834s taup/tests/test_taup_plotting.py::TestTauPyPlotting::test_spherical_many_phases
0.832s signal/tests/test_tf_misfit.py::TestTfPlot::test_plot_tf_gofs
0.740s taup/tau.py::obspy.taup.tau.TauPyModel.__init__
0.723s signal/tests/test_interpolation.py::TestInterpolation::test_plot_lanczos_window
0.718s imaging/tests/test_source.py::TestRadPattern::test_farfield_with_quiver
0.689s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_multiple_traces_10_traces_huge
0.689s taup/tests/test_taup_plotting.py::TestTauPyPlotting::test_spherical_many_phases_buried_station

Warnings (31)

Stage Filename Category Message
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:389 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/seismic_phase.py:1618 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/signal/tf_misfit.py:1344 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:263 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/taup_geo.py:91 DeprecationWarning `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead.
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:418 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/io/mseed/tests/test_mseed_util.py:75 DeprecationWarning NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 128 to int8 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows).
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/io/sac/sactrace.py:1543 DeprecationWarning `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead.
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:391 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:284 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:285 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:264 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:265 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:244 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:286 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:420 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/io/sac/tests/test_sactrace.py:187 DeprecationWarning `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead.
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:299 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
collect /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/clients/filesystem/db.py:18 MovedIn20Warning The ``declarative_base()`` function is now available as sqlalchemy.orm.declarative_base(). (deprecated since: 2.0) (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:300 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:301 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:390 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/_pytest/python.py:166 DeprecationWarning `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead.
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/imaging/scripts/mopad.py:840 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:245 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/slowness_model.py:1818 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:419 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/signal/tf_misfit.py:1084 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/tau_branch.py:243 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
collect /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/signal/polarization.py:15 DeprecationWarning `scipy.odr` is deprecated as of version 1.17.0 and will be removed in SciPy 1.19.0. Please use `https://pypi.org/project/odrpack/` instead.
runtest /home/ubuntu/.pyenv/versions/3.12.8/lib/python3.12/site-packages/obspy/taup/seismic_phase.py:1645 DeprecationWarning Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)