#125238 Report by node gh-actions covering 1989 tests from 61 modules resulted into 1 error

Report

ObsPy version
0.0.0.dev+0.geb51651b97
GitHub Pull Request
https://github.com/obspy/obspy/pull/26
Report file
JSON document
Total runtime
207.6 sec
Report date/time
June 13, 2022, 1:27 p.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
gh-actions
Processor
x86_64
Python Compiler
GCC 10.3.0
Python Implementation
CPython
Python Version
3.8.13
Release
5.13.0-1025-azure
System
Linux
Version
#29~20.04.1-Ubuntu SMP Thu May 19 14:50:45 UTC 2022

Dependencies

cartopy
---
decorator
5.1.1
flake8
---
geographiclib
---
lxml
4.9.0
matplotlib
3.5.2
numpy
1.22.4
obspy
0.0.0.dev+0.geb51651b97
pyproj
1.9.6
requests
2.28.0
scipy
1.8.1
setuptools
62.3.4
shapefile
---
sqlalchemy
1.4.37

Modules (61)

Module Errors / Failures Tracebacks
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.db Not tested -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal 1 1
obspy.taup - -
Summary 1 1

Tracebacks (1)

1 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 703, in test_issue1216
assert len(w) == 2
AssertionError: assert 4 == 2
+ where 4 = len([<warnings.WarningMessage object at 0x7ffa97697100>, <warnings.WarningMessage object at 0x7ffa97697d60>, <warnings.WarningMessage object at 0x7ffa9758fd00>, <warnings.WarningMessage object at 0x7ffa9758fb80>])

Skipped tests (44)

Submodule Test Skip message
core obspy/core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core obspy/core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps Skipped: unsupported proj4 library
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_global Skipped: unsupported proj4 library
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_ortho Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_ortho_longitude_wrap Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_local Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_plot_catalog_before_1900 Skipped: basemap not installed
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_global Skipped: unsupported proj4 library
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_ortho Skipped: no or invalid basemap installation
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_local Skipped: no or invalid basemap installation
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_global Skipped: cartopy not installed
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_ortho Skipped: cartopy not installed
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_local Skipped: cartopy not installed
core.util obspy/core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util obspy/core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util obspy/core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics obspy/geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_with_geographiclib Skipped: Module geographiclib is not installed
geodetics obspy/geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_issue_375 Skipped: Module geographiclib is not installed
imaging obspy/imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii obspy/io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii obspy/io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.nordic obspy/io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic obspy/io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde obspy/io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml obspy/io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan obspy/io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh obspy/io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh obspy/io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_with_extra_field Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_with_extra_field Skipped: pyshp not installed
io.wav obspy/io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y obspy/io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal obspy/signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal obspy/signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_spectrogram_plot Skipped: matplotlib >= 3 shifts labels
taup obspy/taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_p_iasp91_geo_manual Skipped: Module geographiclib is not installed
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_pierce_p_iasp91_geo Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_single_path_geo_iasp91 Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_taup_geo.py::TestTaupGeo::test_path_geo Skipped: Module geographiclib is not installed or too old.
taup obspy/taup/tests/test_taup_geo.py::TestTaupGeo::test_path_resampling Skipped: Module geographiclib is not installed or too old.

Slowest tests (20)

Runtime Test
11.847s obspy/io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
7.774s obspy/taup/__init__.py::obspy.taup
5.984s obspy/taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
3.438s obspy/taup/tau.py::obspy.taup.tau.plot_travel_times
3.036s obspy/taup/tests/test_tau.py::TestTauPyModel::test_regional_models
3.017s obspy/io/arclink/tests/test_inventory_xml.py::ArclinkInventoryTestCase::test_auto_read_arclink_xml
2.999s obspy/taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
2.971s obspy/signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
2.914s obspy/core/stream.py::obspy.core.stream.read
2.337s obspy/taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
2.334s obspy/signal/tests/test_polarization.py::PolarizationTestCase::test_polarization_vidale
2.323s obspy/taup/tests/test_velocity_model.py::TestTauPyVelocityModel::test_read_velocity_model
2.269s obspy/signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
2.232s obspy/signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
1.963s obspy/core/tests/test_stream.py::TestStream::test_read_url_via_network
1.874s obspy/core/tests/test_trace.py::TestTrace::test_remove_response_plot
1.442s obspy/signal/tests/test_rotate.py::RotateTestCase::test_rotate2zne_against_lqt_different_combinations
1.414s obspy/taup/tests/test_tau.py::TestTauPyModel::test_surface_wave_ttimes
1.383s obspy/taup/tests/test_taup_plotting.py::TestTauPyPlotting::test_spherical_many_phases
1.267s obspy/signal/tests/test_tf_misfit.py::TestTfPlot::test_plot_tf_misfits

Warnings (25)

Stage Filename Category Message
runtest /home/runner/work/obspy/obspy/obspy/io/seiscomp/inventory.py:496 UserWarning Clock drift division by sample rate of 0: using sec/sample
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2108 MatplotlibDeprecationWarning Auto-removal of grids by pcolor() and pcolormesh() is deprecated since 3.5 and will be removed two minor releases later; please call grid(False) first.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 52.49999950000001 results in singular transformations; automatically expanding.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempted to set non-positive right xlim on a log-scaled axis. Invalid limit will be ignored.
runtest /home/runner/work/obspy/obspy/obspy/io/nordic/utils.py:184 UserWarning Lines of type I have not been implemented yet, please submit a development request
collect /home/runner/work/obspy/obspy/obspy/imaging/maps.py:35 UserWarning Cartopy not installed, map plots will not work.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 10.4999995 results in singular transformations; automatically expanding.
runtest /home/runner/work/obspy/obspy/obspy/taup/tau_branch.py:489 UserWarning Resizing a TauP array inplace failed due to the existence of other references to the array, creating a new array. See Obspy #2280.
runtest /home/runner/work/obspy/obspy/obspy/imaging/beachball.py:246 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
runtest /home/runner/work/obspy/obspy/obspy/core/event/resourceid.py:622 UserWarning overwritting the id attribute of a ResourceIdentifierobject is very dangerous and will raise an exception in a future version of obspy
runtest /home/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 140714440096640 and id of smi:local/01f40cf5-339c-4213-a3c9-487c14bd75d8 no longer exists, trying to find an object with the same id
runtest /home/runner/work/obspy/obspy/obspy/imaging/source.py:197 UserWarning Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations.
runtest /home/runner/work/obspy/obspy/obspy/taup/tau.py:340 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
collect /home/runner/work/obspy/obspy/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.
runtest /home/runner/work/obspy/obspy/obspy/core/utcdatetime.py:1084 ObsPyDeprecationWarning Comparing UTCDateTime objects of different precision is not defined will raise an Exception in a future version of obspy
runtest /home/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 140714440094768 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id
runtest /home/runner/work/obspy/obspy/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.
runtest /home/runner/work/obspy/obspy/obspy/io/seiscomp/inventory.py:514 UserWarning Something went hopelessly wrong, found sampling-rate of 0!
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 9.223855751103727 results in singular transformations; automatically expanding.
collect /home/runner/work/obspy/obspy/obspy/clients/arclink/__init__.py:34 ObsPyDeprecationWarning ArcLink protocol has been officially deprecated and some main servers have been shut down already. Please consider using other methods like FDSN web services to fetch data. ArcLink functionality is now untested in ObsPy.
runtest /home/runner/work/obspy/obspy/obspy/io/mseed/core.py:710 UserWarning Detected non contiguous data array in Stream[0].data. Trying to fix array.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:1544 UserWarning 4/4 segments omitted in file '/tmp/obspy-jdrncucu.npz' (time ranges already covered).
runtest /usr/share/miniconda3/envs/test3.8/lib/python3.8/site-packages/numpy/matrixlib/defmatrix.py:69 PendingDeprecationWarning the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
runtest <doctest obspy.core.event.resourceid.ResourceIdentifier[37]>:1 ObsPyDeprecationWarning Converts the current ID to a valid QuakeML URI. This method is deprecated, use :meth:`get_quakeml_id` instead. Only an invalid QuakeML ResourceIdentifier string it will be converted to a valid one. Otherwise nothing will happen but after calling this method the user can be sure that the ID is a valid QuakeML URI. The resulting ID will be of the form smi:authority_id/prefix/resource_id :type authority_id: str, optional :param authority_id: The base url of the resulting string. Defaults to ``"local"``.
runtest /home/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 140714440097168 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id