#124545 Report by node gh-actions covering 2013 tests from 60 modules resulted into 11 errors

Report

ObsPy version
1.3.0.post0+78.g5c960cc932
GitHub Pull Request
https://github.com/obspy/obspy/pull/3073
Report file
JSON document
Total runtime
222.4 sec
Report date/time
May 24, 2022, 5:02 a.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
gh-actions
Processor
x86_64
Python Compiler
GCC 9.4.0
Python Implementation
CPython
Python Version
3.7.12
Release
5.13.0-1023-azure
System
Linux
Version
#27~20.04.1-Ubuntu SMP Mon Apr 25 22:39:07 UTC 2022

Dependencies

cartopy
0.17.0
decorator
5.1.1
flake8
---
geographiclib
2.0
lxml
4.8.0
matplotlib
3.2.2
numpy
1.15.4
obspy
1.3.0.post0+78.g5c960cc932
pyproj
2.6.1.post1
pytest
7.1.2
pytest-json-report
1.5.0
requests
2.27.1
scipy
1.1.0
setuptools
62.3.2
shapefile
---
sqlalchemy
1.4.36

Modules (60)

Module Errors / Failures Tracebacks
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.db Not tested -
obspy.geodetics - -
obspy.imaging 3 1 2 3
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal 8 4 5 6 7 8 9 10 11
obspy.taup - -
Summary 11 11

Tracebacks (11)

1 imaging 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/imaging/tests/test_ppsd.py", line 33, in test_ppsd_plot
period_lim=(0.02, 100), show_mode=True, show_mean=True)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1900, in plot
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

2 imaging 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/imaging/tests/test_ppsd.py", line 49, in test_ppsd_plot_frequency
xaxis_frequency=True)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1900, in plot
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

3 imaging 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/imaging/tests/test_ppsd.py", line 67, in test_ppsd_plot_cumulative
max_percentage=None)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1900, in plot
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

4 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 191, in test_ppsd
assert len(ppsd.times_processed) == 4
AssertionError: assert 0 == 4
+ where 0 = len([])
+ where [] = <obspy.signal.spectral_estimation.PPSD object at 0x7f91871bc790>.times_processed

5 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 288, in test_ppsd_w_iris
(per, perval) = ppsd.get_percentile(percentile=50)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1324, in get_percentile
hist_cum = self.current_histogram_cumulative
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 617, in current_histogram_cumulative
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

6 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 505, in test_earthquake_models
show_noise_models=False, show=False)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1900, in plot
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

7 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 533, in test_ppsd_infrasound
show=False)
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 1900, in plot
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

8 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 676, in test_issue1216
assert ppsd.current_histogram is not None
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 612, in current_histogram
self.__check_histogram()
File "/home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py", line 820, in __check_histogram
raise Exception(msg)
Exception: No data accumulated

9 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 718, in test_wrong_trace_id_message
assert len(w) == 4
AssertionError: assert 1 == 4
+ where 1 = len([<warnings.WarningMessage object at 0x7f918a6628d0>])

10 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 770, in test_exclude_last_sample
assert 3 == len(ppsd._times_processed)
AssertionError: assert 3 == 0
+ where 0 = len([])
+ where [] = <obspy.signal.spectral_estimation.PPSD object at 0x7f91933320d0>._times_processed

11 signal 

Traceback (most recent call last):
File "/home/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 904, in test_short_trace_warning
success = ppsd.add(tr)
File "/home/runner/work/obspy/obspy/obspy/core/util/base.py", line 707, in __exit__
self._assert_warnings()
File "/home/runner/work/obspy/obspy/obspy/core/util/base.py", line 742, in _assert_warnings
raise AssertionError(msg % (category.__name__, regex))
AssertionError: Expected warning not raised: (UserWarning, Trace is shorter than this PPSD's 'ppsd_length' (3600.0 seconds). Skipping trace: BW.KW1..EHZ | 2011-03-31T00:00:00.180000Z - 2011-03-31T00:00:00.210000Z | 100.0 Hz, 4 samples)

Skipped tests (19)

Submodule Test Skip message
core core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_bug150 Skipped: Geographiclib installed, not using calc_vincenty_inverse
imaging imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.wav io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal signal/tests/test_quality_control.py::QualityControlTestCase::test_schema_validation Skipped: Test requires the jsonschema module

Slowest tests (20)

Runtime Test
9.640s io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
8.588s core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_local
6.990s core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps
5.996s taup/__init__.py::obspy.taup
4.861s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
3.107s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
3.055s core/stream.py::obspy.core.stream.read
2.810s signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
2.789s taup/tau.py::obspy.taup.tau.plot_travel_times
2.769s signal/tests/test_polarization.py::PolarizationTestCase::test_polarization_vidale
2.574s taup/tests/test_tau.py::TestTauPyModel::test_regional_models
2.413s taup/tests/test_velocity_model.py::TestTauPyVelocityModel::test_read_velocity_model
2.396s taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
2.297s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_azim_section
2.148s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_wiggles_vertical_section
2.142s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_wiggles_horizontal_section
2.140s io/arclink/tests/test_inventory_xml.py::ArclinkInventoryTestCase::test_auto_read_arclink_xml
2.139s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_colored_section
2.123s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_wiggles_positive_section
2.122s imaging/tests/test_waveform.py::TestWaveformPlot::test_plot_wiggles_negative_section

Warnings (16)

Stage Filename Category Message
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:2223 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/cartopy/mpl/geoaxes.py:782 MatplotlibDeprecationWarning Passing the minor parameter of set_xticks() positionally is deprecated since Matplotlib 3.2; the parameter will become keyword-only two minor releases later.
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/cartopy/mpl/geoaxes.py:1063 DeprecationWarning Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:491 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:885 UserWarning Trace is shorter than this PPSD's 'ppsd_length' (3600.0 seconds). Skipping trace: IU.ANMO.00.LHZ | 2010-01-01T00:00:00.069500Z - 2010-01-01T23:59:59.069500Z | 1.0 Hz, 86400 samples
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/numpy/matrixlib/defmatrix.py:68 PendingDeprecationWarning the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:2230 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/cartopy/mpl/geoaxes.py:829 MatplotlibDeprecationWarning Passing the minor parameter of set_yticks() positionally is deprecated since Matplotlib 3.2; the parameter will become keyword-only two minor releases later.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:885 UserWarning Trace is shorter than this PPSD's 'ppsd_length' (3600.0 seconds). Skipping trace: GR.FUR..BHZ | 2017-01-01T00:00:00.000000Z - 2017-01-01T01:59:59.000000Z | 1.0 Hz, 7200 samples
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:2225 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/fftpack/basic.py:160 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:885 UserWarning Trace is shorter than this PPSD's 'ppsd_length' (300 seconds). Skipping trace: IM.I59H1..BDF | 2020-10-31T00:00:00.000000Z - 2020-10-31T00:07:40.000000Z | 20.0 Hz, 9201 samples
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:1344 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
collect /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:885 UserWarning Trace is shorter than this PPSD's 'ppsd_length' (3600.0 seconds). Skipping trace: BW.KW1..EHZ | 2011-03-31T00:00:00.180000Z - 2011-03-31T02:36:00.180000Z | 100.0 Hz, 936001 samples
runtest /usr/share/miniconda3/envs/test/lib/python3.7/site-packages/scipy/signal/signaltools.py:1593 FutureWarning Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
runtest /home/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:885 UserWarning Trace is shorter than this PPSD's 'ppsd_length' (3600.0 seconds). Skipping trace: BW.KW1..EHZ | 2011-03-31T00:00:00.180000Z - 2011-03-31T02:36:00.180000Z | 100.0 Hz, 936001 samples